Allard G, Ryan FJ, Jeffery IB, Claesson MJ. SPINGO: a rapid species-classifier for microbial amplicon sequences. BMC Bioinformatics. 2015 Oct 8;16(1):324. doi: 10.1186/s12859-015-0747-1. PubMed PMID: ...
Most of these can be installed via conda packages. Noting that some tools have different samtools version expectations, which can lead to problems. In particular the bioconda install of samtools is v0 ...
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